Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3816Probable acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960. (593 aa)    
Predicted Functional Partners:
fadB
3-hydroxyacyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1024.
 
 0.982
CV_3817
Probable electron transfer flavoprotein alpha subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2025.
 
 0.973
CV_3818
Probable electron transfer flavoprotein, beta subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2086.
 
 
 0.946
alkK
acyl-CoA synthetase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0318/TC:9.B.17.1.4.
 
 
 0.938
CV_1785
Probable acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1960.
  
  
 
0.907
CV_3062
Probable enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.813
atoB
acetyl-CoA C-acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.803
fadA
acetyl-CoA C-acyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.778
paaH
3-hydroxybutyryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1250.
 
 0.756
CV_3916
Probable electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
 
 
 0.698
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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