Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilBType 4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2804/TC:3.A.15.1.1. (568 aa)    
Predicted Functional Partners:
pilC
Fimbrial assembly transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
 0.988
hofF
General secretion pathway protein F; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1.
 
 
 0.974
CV_3826
Probable type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.950
hofG
General secretion pathway protein G; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
 
 
 0.918
pilM
Type 4 fimbrial biogenesis protein PilM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0849.
 
 
 
 0.893
CV_3806
Probable general secretion pathway protein L; Identified by sequence similarity; putative; ORF located using Blastx/COG3297.
  
 
 0.871
pilQ
Type 4 fimbrial biogenesis protein PilQ; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.2.1.
 
 
 
 0.866
gspI
General secretion pathway protein I; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165/TC:3.A.15.1.1.
  
 
 0.837
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
 
 
 0.831
gspH
General secretory pathway protein H; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
  
 
 0.829
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.