Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_3846Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3591. (269 aa)    
Predicted Functional Partners:
CV_3844
Probable two-component sensor protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
 
    0.734
CV_1854
Probable periplasmic binding protein-related protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3221.
   
    0.679
cdh
CDPdiacylglycerol diphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/COG2134.
  
     0.659
CV_3778
Hypothetical protein.
  
     0.596
CV_3845
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477.
       0.568
CV_0861
Hypothetical protein.
  
     0.527
CV_0884
Hypothetical protein.
  
     0.488
CV_0744
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3152.
   
    0.461
CV_3126
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
   
    0.461
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
     0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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