STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_3896Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.2.4. (735 aa)    
Predicted Functional Partners:
CV_3897
Probable hemin degrading factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
   
 0.836
entB
Isochorismatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1535.
  
  
 0.719
CV_3895
Hypothetical protein.
  
  
 0.713
CV_0400
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0810/TC:2.C.1.1.1.
 
 
 0.609
CV_1964
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0748.
  
  
 0.608
CV_3906
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810/TC:2.C.1.1.1.
 
 
 0.606
CV_4254
Probable TonB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810.
  
 
 0.529
CV_0464
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
 
 
 0.528
fhuA
Ferrichrome-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1629/TC:1.B.14.1.4.
  
  
 0.496
fepA
Enterobactin-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.7.1.
 
  
 0.486
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.