Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3897Probable hemin degrading factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (344 aa)    
Predicted Functional Partners:
CV_3896
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.2.4.
 
   
 0.836
fecE
Ferric citrate transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1120.
   
 0.786
CV_1793
Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1120.
   
 0.781
mxcB
Iron-chelator utilization protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2375.
 
    0.748
CV_3895
Hypothetical protein.
  
  
 0.617
fepC
Enterobactin-iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1120.
    
 0.598
CV_1560
Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1120/TC:3.A.1.14.3.
    
 0.580
CV_1487
Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1120/TC:3.A.1.14.3.
   
 0.567
CV_3898
Probable permease of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0609; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.564
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
       0.561
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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