Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fecEFerric citrate transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1120. (255 aa)    
Predicted Functional Partners:
CV_3898
Probable permease of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0609; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.983
hmuU
Hemin transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.5; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.940
btuC
Vitamin B12 transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0609/TC:3.A.1.13.1; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.938
fepD
Enterobactin-iron transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0609/TC:3.A.1.14.2; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.924
fecD
Ferric citrate transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.5; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.920
fepG
Enterobactin-iron transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.2; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.886
CV_1559
Probable iron transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0614.
 
 0.840
CV_0496
Probable substrate-binding periplasmatic (PBP) ABC transporter protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0614.
 
 
 0.822
entB
Isochorismatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1535.
  
  
 0.822
CV_3897
Probable hemin degrading factor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
   
 0.786
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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