Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_3943Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136. (249 aa)    
Predicted Functional Partners:
CV_4396
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0577.
 
 0.994
CV_3942
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1.
 
 
 0.980
CV_3941
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
 
 
 0.871
dppC
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.5.
 
    
 0.857
lolC
Lipoprotein releasing system trasmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1.
  
 
 0.843
macB
Probable ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.785
CV_4052
Probable amino acid ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.10.
 
    
 0.754
cysW
Sulfate transport system permease protein CysW; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0555/TC:3.A.1.6.1.
 
      0.749
CV_2982
Probable amino-acid transport system permease ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.10.
 
    
 0.707
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.1.
 
    
 0.642
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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