Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadH2,4-dienoyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/COG0446. (673 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0069.
  
 
 0.999
ubiB
NAD(P)H-flavin reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0543/TC:3.D.5.1.1.
  
 0.950
CV_3818
Probable electron transfer flavoprotein, beta subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2086.
  
 
 0.927
CV_3817
Probable electron transfer flavoprotein alpha subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2025.
  
 
 0.891
vioD
vioD - hydroxylase; Catalyzes the oxygenation of the 6-position of protodeoxyviolaceinate to form proviolacein.
    
 0.870
nuoF
NADH-ubiquinone oxidoreductase, chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 
 0.855
narH
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1140.
    
 
 0.854
CV_0303
Probable indolepyruvate ferredoxin oxidoreductase, subunit alpha; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0674.
   
 
 0.826
CV_1804
Probable oxyreductase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0674.
   
 
 0.826
nuoE
NADH-ubiquinone oxidoreductase, chain E; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1905.
  
 
 0.825
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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