Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4023Hypothetical protein. (331 aa)    
Predicted Functional Partners:
CV_4022
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
     
 0.799
CV_4026
Probable lipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2244/TC:2.A.66.2.5.
       0.796
capH
Capsular polysaccharide synthesis enzyme O-acetyl transferase; Identified by sequence similarity; putative; ORF located using Blastx.
       0.795
CV_4025
Hypothetical protein.
       0.776
wecC
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0677; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.764
wecB
UDP-N-acetylglucosamine 2-epimerase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0381; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.764
CV_4021
Probable glycosyl transferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0438.
       0.741
neuA
N-acylneuraminate cytidylyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1083.
       0.493
CV_4029
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.465
neuB
N-acetylneuraminic acid synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2089.
       0.456
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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