Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4034Probable aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)    
Predicted Functional Partners:
neuC
N-acetylglucosamine-6-phosphate 2-epimerase/N-acetylglucosamine-6-phosphatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0381.
 
  
 0.965
CV_4030
Probable sugar-phosphate nucleotide transferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0517.
 
  
 0.957
CV_4035
Probable nucleotide sugar dehydratase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0451.
 
  
 0.950
neuB
N-acetylneuraminic acid synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2089.
 
  
 0.945
neuA
N-acylneuraminate cytidylyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1083.
 
   
 0.911
CV_4115
Probable polysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1086.
  
 0.870
CV_3890
Probable spore coat polysaccharide biosynthesis protein E; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0662.
 
  
 0.811
CV_4029
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.779
CV_4036
Hypothetical protein.
       0.773
CV_4026
Probable lipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2244/TC:2.A.66.2.5.
 
  
 0.772
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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