Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4043Probable ribosomal-protein-alanine N-acetyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1670. (185 aa)    
Predicted Functional Partners:
CV_4044
Probable transporter, LysE family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1280/TC:2.A.76.1.1.
       0.757
CV_3630
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
  
     0.581
CV_3628
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0454.
  
     0.541
CV_1778
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
 
     0.535
CV_4042
Probable amino acid efflux protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.1.
       0.532
CV_3629
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0454.
  
     0.475
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.460
CV_2798
Probable macrolide efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.21.1.
  
     0.446
CV_4041
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2202.
       0.403
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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