STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4053Probable amino acid ABC transporter, periplasmic-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10. (261 aa)    
Predicted Functional Partners:
CV_4052
Probable amino acid ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.10.
 0.998
CV_2982
Probable amino-acid transport system permease ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.10.
 0.996
gltK
Glutamate/aspartate transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.4.
 
 0.976
gltJ
Glutamate/aspartate transport system permease; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.4.
 
 0.976
hisQ1
Histidine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.1.
 
 0.976
hisM2
Histidine transport system membrane protein M; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.11.
    0.976
glnP
Glutamine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.2.
 
 0.970
hisQ2
Histidine transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.11.
 
 0.970
CV_2981
Probable cystine transport ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126.
 
 0.955
hisM1
Histidine transport system membrane protein M; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.1.
    0.954
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.