Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_4069Probable cytochrome c5; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3245. (256 aa)    
Predicted Functional Partners:
petC
Ubiquinol-cytochrome c reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2857/TC:3.D.3.2.1.
 
 
 0.940
cyc
Cytochrome-c oxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2863.
 
 
 
 0.925
CV_0081
Probable cytochrome c4; Identified by sequence similarity; putative; ORF located using Blastx/COG2863.
 
 
 
 0.887
petA
Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.805
petB
Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 
 0.746
CV_0626
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3308.
  
     0.705
CV_1173
Probable cytochrome-c oxidase, subunit II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2993.
 
 
 
 0.690
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.632
CV_0605
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
   
 0.617
CV_1174
Probable cytochrome-c oxidase, subunit I; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3278/TC:3.D.4.3.1; Belongs to the heme-copper respiratory oxidase family.
  
   0.598
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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