Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV_4079Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165. (147 aa)    
Predicted Functional Partners:
CV_4083
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2165.
  
  
 0.939
CV_4080
Hypothetical protein.
 
  
 0.897
CV_0479
Probable type-4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2165.
 
  
 0.861
CV_0484
Probable type IV prepilin; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.842
CV_3111
Probable type-4 fimbrial pilin related signal peptide protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.837
CV_0482
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3419.
 
  
 0.833
pilV
Type-4 fimbrial biogenesis PilV transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2165.
 
  
 0.819
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
 
  
 0.818
pilO
Type 4 fimbrial biogenesis protein PilO; Identified by sequence similarity; putative; ORF located using Blastx/COG3167.
 
  
 0.808
CV_4081
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
     
 0.804
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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