Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4127Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673. (352 aa)    
Predicted Functional Partners:
udg
UDPglucose 6-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0677; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.990
CV_4124
Probable aminotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.981
CV_4125
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0110.
  
 0.976
CV_4128
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1434.
       0.775
lysS
lysyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1190; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.773
wzx
O-antigen translocase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2244/TC:2.A.66.2.2.
 
  
 0.768
CV_4126
Hypothetical protein.
       0.768
gntV
Gluconokinase; Identified by sequence similarity; putative; ORF located using Blastx/COG3265.
 
    
 0.743
CV_4120
Probable glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0438.
 
  
 0.736
CV_1407
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673.
  
     0.735
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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