Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4128Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1434. (190 aa)    
Predicted Functional Partners:
CV_4127
Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0673.
       0.775
CV_4125
Probable acetyltransferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0110.
       0.768
CV_4126
Hypothetical protein.
       0.768
udg
UDPglucose 6-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0677; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.758
CV_2219
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.743
wzx
O-antigen translocase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2244/TC:2.A.66.2.2.
       0.553
CV_4122
Hypothetical protein.
       0.542
CV_4124
Probable aminotransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0399; Belongs to the DegT/DnrJ/EryC1 family.
       0.527
CV_2218
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0596.
  
     0.508
CV_1109
Probable ATP-sensitive inward rectifier potassium channel related transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1226.
  
     0.447
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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