Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4235Probable (S)-2-hydroxy-acid oxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247. (1284 aa)    
Predicted Functional Partners:
CV_3028
Probable iron-sulphur protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1139.
  
 
 0.881
CV_3817
Probable electron transfer flavoprotein alpha subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2025.
  
 
 0.865
CV_3818
Probable electron transfer flavoprotein, beta subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2086.
  
 
 0.821
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.817
CV_3029
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1556.
  
 
 0.796
CV_4387
Probable cytochrome c-type biogenesis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1333.
  
     0.697
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.693
nrfE
Cytochrome C-type biogenesis transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477/TC:9.B.14.1.2.
 
  
 0.675
ubiB
NAD(P)H-flavin reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0543/TC:3.D.5.1.1.
 
 
 0.671
CV_3788
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.643
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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