STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4240Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family. (540 aa)    
Predicted Functional Partners:
CV_2935
Probable chitinase A; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx; Belongs to the glycosyl hydrolase 18 family.
 
 0.998
CV_1440
Probable hydrolase transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
0.990
CV_3316
Probable chitinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0178.
 
 
0.986
CV_1493
Probable b-N-acetylhexosaminidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3525.
 
  
 0.977
CV_0259
Probable glycosyl hyrolase, family 3; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1472.
 
  
 0.937
nagZ
Probable beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.925
chiA
Endochitinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
 
 
 0.879
CV_0861
Hypothetical protein.
 
 
 
 0.863
CV_0553
Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397.
 
  
 0.860
CV_0554
Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3397.
 
  
 0.860
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.