STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4249Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0419. (195 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
    0.806
pilP
Type 4 fimbrial biogenesis protein PilP; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3168.
  
     0.709
pilS
Two-component system sensor protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0642.
  
     0.705
CV_2766
Probable transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3170/TC:3.D.3.1.1.
  
     0.693
pilO
Type 4 fimbrial biogenesis protein PilO; Identified by sequence similarity; putative; ORF located using Blastx/COG3167.
  
     0.652
CV_1136
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0288/TC:2.C.1.2.1.
  
     0.630
CV_4246
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3545.
 
     0.613
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.611
exoA
Exodeoxyribonuclease III; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0708.
  
    0.602
CV_3684
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1721.
  
     0.593
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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