Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpsDNA-binding stress protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0783; Belongs to the Dps family. (155 aa)    
Predicted Functional Partners:
clpS
Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.875
elaB
Transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.856
CV_3739
Probable peroxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0450.
  
  
 0.792
prkA
Protein kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2766.
   
    0.781
sdaC
Serine transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0814/TC:2.A.42.2.1.
    
   0.769
CV_3333
Probable sigma-54 modulation protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1544.
  
    0.757
ohr2
Organic hydroperoxide resistance protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1764.
  
  
 0.745
CV_1324
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1764.
  
  
 0.745
ohr1
Organic hydroperoxide resistance protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1764.
  
  
 0.745
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0655; Belongs to the WrbA family.
  
  
 0.737
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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