STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4254Probable TonB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810. (278 aa)    
Predicted Functional Partners:
fepA
Enterobactin-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.7.1.
  
 
 0.924
CV_3348
Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1.
 
 
 0.905
CV_1491
Probable outer membrane receptor; Identified by sequence similarity; putative; ORF located using Blastx/COG4771.
  
 
 0.864
exdD
Biopolymer transport exbD-related transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0848/TC:2.C.1.1.1.
 
 
 0.855
CV_0494
Probable outer membrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.3.1.
 
 
 
 0.848
CV_3188
Probable TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.2.
  
 
 0.835
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.797
tolR
TolR protein; Identified by sequence similarity; putative; ORF located using Blastx/TC:2.C.1.2.1.
  
 
 0.741
exbD2
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848/TC:2.C.1.1.1.
  
 
 0.741
exbD5
Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative;/COG0848/TC:2.C.1.1.1.
  
 
 0.741
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.