Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4255Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (125 aa)    
Predicted Functional Partners:
CV_4256
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0824.
 
     0.826
CV_3398
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1241.
  
     0.763
CV_1317
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3109.
  
     0.756
CV_4254
Probable TonB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810.
       0.740
CV_3329
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3117.
  
     0.668
CV_3904
Conserved hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.632
CV_4257
Probable thioredoxin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0526.
       0.626
CV_3325
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2982.
  
     0.622
hemY
Protein porphyrin biosynthesis; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3071.
  
     0.604
CV_2404
Probable KrfA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0419.
  
     0.584
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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