Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoDIdentified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3540. (701 aa)    
Predicted Functional Partners:
phoA1
Alkaline phosphatase precursor; Identified by sequence similarity; putative; ORF located using Blastx/COG1785; Belongs to the alkaline phosphatase family.
 
 
 0.968
phoA2
Alkaline phosphatase precursor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1785; Belongs to the alkaline phosphatase family.
 
 
 0.967
mtrA
GTP cyclohydrolase I; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0302.
 
  
 0.934
folE
GTP cyclohydrolase I protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0302.
    
 0.923
folB
Dihydroneopterin aldolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1539.
     
 0.921
ntpA
ATP diphosphatase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0494.
     
  0.900
CV_3508
Probable 6-pyruvoyltetrahydrobiopterin synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0720.
     
  0.900
phnI
Phosphonate metabolism protein PhnI; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3626.
   
  
 0.684
CV_3407
Probable prephenate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0287.
      
 0.646
CV_3794
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2374.
  
 0.599
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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