Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4284Probable nitrate ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1116/TC:3.A.1.17.1. (437 aa)    
Predicted Functional Partners:
CV_4283
Probable ABC transporter nitrate permease; Identified by sequence similarity; putative; ORF located using Blastx/COG0600/TC:3.A.1.16.3.
 
   
 0.970
CV_2291
Probable ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0600/TC:3.A.1.17.1.
 
 0.942
tauC
Taurine transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0600/TC:3.A.1.17.1.
 
 0.939
CV_2289
Probable taurine transport system substrate-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0715/TC:3.A.1.17.2.
 
 
 0.904
nasF
Nitrate transporter protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0715.
  
 
 0.886
CV_2862
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2141.
  
  
 0.536
glnB
Nitrogen regulatory protein P-II-1; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0347; Belongs to the P(II) protein family.
    
 
 0.459
glnK
Nitrogen regulatory protein P-II-2; Identified by sequence similarity; putative; ORF located using Blastx/COG0347; Belongs to the P(II) protein family.
    
 
 0.459
CV_4286
Probable acid phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
 
     0.456
CV_4285
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
       0.454
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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