STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4286Probable acid phosphatase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (550 aa)    
Predicted Functional Partners:
CV_3526
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1858.
 
     0.741
CV_2178
Probable transmembrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.15.2.
  
     0.681
CV_3307
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.594
CV_4288
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0668/TC:1.A.23.2.1.
 
     0.577
iagB
Cell invasion protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0741.
  
     0.565
CV_4287
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.550
CV_1739
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.543
CV_4285
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
       0.520
CV_3478
Probable manganese transport transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1914/TC:2.A.55.3.1.
  
     0.511
CV_2357
Hypothetical protein.
  
     0.503
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.