Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
betTHigh-affinity choline transport protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1292/TC:2.A.15.1.1; Belongs to the BCCT transporter (TC 2.A.15) family. (510 aa)    
Predicted Functional Partners:
CV_4303
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3132; Belongs to the UPF0502 family.
       0.661
betA
Glucose-methanol-choline oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG2303.
  
  
 0.458
osmB
Osmotically inducible lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
      
 0.451
CV_2218
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0596.
  
  
 0.428
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.416
glpF
Glycerol uptake facilitator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0580/TC:1.A.8.2.1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.407
CV_4304
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
       0.401
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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