Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prePProlyl endopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/COG1505. (677 aa)    
Predicted Functional Partners:
CV_4305
Probable metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/COG3590.
 
  
 0.628
CV_1270
Probable dipeptidyl anminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/COG1506.
  
   
 0.612
CV_4307
Hypothetical protein.
     
 0.588
CV_4308
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
       0.576
CV_4309
Probable L-allo-threonine aldolase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2008.
       0.518
CV_4310
Probable transcription regulator, TetR family; Identified by sequence similarity; putative; ORF located using Blastx/COG1309.
       0.505
CV_1987
Probable metallopeptidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3590.
  
  
 0.402
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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