STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4324Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (139 aa)    
Predicted Functional Partners:
CV_1888
Hypothetical protein.
  
     0.666
CV_1403
Probable secreted protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0654.
  
     0.595
CV_2935
Probable chitinase A; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx; Belongs to the glycosyl hydrolase 18 family.
  
     0.578
CV_4240
Probable chitinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3325; Belongs to the glycosyl hydrolase 18 family.
  
     0.548
CV_0958
Probable tis1421-transposase orfa protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3293.
  
     0.525
oppF
Oligopeptide ABC transport system ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1124/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
       0.522
oppD
Oligopeptide transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0444/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
       0.522
CV_4017
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3293.
  
     0.504
CV_1440
Probable hydrolase transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.493
CV_0957
Probable TIS1421-transposase orfB protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3293.
  
     0.486
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.