STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0444/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily. (333 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.1.
 
 0.999
oppB
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.1.
 0.998
dppC
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.5.
  
 0.992
CV_4329
Probable oligopeptide ABC transporter system, substrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1.
 
 0.992
CV_2686
Probable ABC trasporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2.
  
 0.991
CV_0800
Probable oligopeptide ABC transporter system, substrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1.
 
 0.986
CV_1980
Probable ABC trasporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2.
  
 0.981
oppF
Oligopeptide ABC transport system ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1124/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
 
  
 
0.981
dppB
Dipeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0601/TC:3.A.1.5.5.
 
 0.942
CV_1979
Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.3.
 
 0.920
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.