STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein mreC; Involved in formation and maintenance of cell shape. (302 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein mreB; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1077.
 
 0.997
mreD
Rod shape-determining protein MreD; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2891.
 
 
 0.990
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
 
 0.987
mrdB
Probable rod shape-determining; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.940
minC
Cell division inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.902
radC
DNA repair protein RadC; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2003; Belongs to the UPF0758 family.
  
  
 0.871
ftsI
Penicillin-binding protein 3 precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
 
 
 0.850
minD
Septum site-determining protein minD; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2894.
 
    0.846
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.776
CV_3539
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1426.
 
 
 
 0.730
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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