Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CV_4372Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3000. (294 aa)    
Predicted Functional Partners:
CV_2656
Probable cytochrome P450 hydroxylase; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG2124; Belongs to the cytochrome P450 family.
  
 
 0.592
CV_4379
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642.
  
    0.576
desD
linoleoyl-CoA desaturase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3239.
 
  
 0.567
CV_2450
Hypothetical protein.
  
 
 0.550
CV_2452
Probable linoleoyl-CoA desaturase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3239.
 
  
 0.544
CV_4373
Probable glutathione transferase; Identified by sequence similarity; putative; ORF located using Blastx/COG0625.
 
     0.530
CV_2978
Probable geranylgeranyl-diphosphate geranylgeranyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG1562.
  
 
 0.529
CV_2979
Probable phytoene synthase-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1562.
  
 
 0.529
vioC
vioC monooxygenase; Catalyzes the hydroxylation of the 16-position of protoviolaceinate and protodeoxyviolaceinate to form violacein and deoxyviolacein, respectively.
  
 
 0.516
CV_0841
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
  
    0.482
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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