Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein F; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1040. (222 aa)    
Predicted Functional Partners:
smf
Smf protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0758.
 
 
 0.952
comA
Competence protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2333.
 
  
 0.934
CV_4000
Probable competence protein ComM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0606.
 
  
 0.883
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.809
CV_3407
Probable prephenate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0287.
   
    0.801
radC
DNA repair protein RadC; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2003; Belongs to the UPF0758 family.
 
    0.800
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1820.
  
    0.799
xerD
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.762
hemG
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.733
CV_3055
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2072.
  
    0.733
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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