STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4387Probable cytochrome c-type biogenesis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1333. (678 aa)    
Predicted Functional Partners:
nrfE
Cytochrome C-type biogenesis transmembrane protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0477/TC:9.B.14.1.2.
 
  
 0.994
CV_0955
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx.
  
     0.775
CV_4257
Probable thioredoxin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0526.
 
  
 0.734
CV_4235
Probable (S)-2-hydroxy-acid oxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247.
  
     0.697
CV_1990
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0542.
  
     0.689
CV_0626
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3308.
  
     0.629
cyc
Cytochrome-c oxidase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2863.
     
 0.595
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
  
 0.576
cobA2
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
    0.566
CV_0565
Hypothetical protein.
  
     0.561
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.