STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_4396Probable ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0577. (407 aa)    
Predicted Functional Partners:
CV_4397
Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136.
 
 0.998
CV_3943
Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136.
 
 0.994
lolD
Probable ATP-binding component, ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.990
CV_3734
Probable ATP-binding component, ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136.
 
 0.987
macA
ABC export system, membrane fusion protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0845/TC:8.A.1.1.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.976
ftsE
Cell division ATP-binding protein ftsE, ABC transporter ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
   
 0.923
hisP
ATP-binding component of histidine transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126.
 
      0.888
CV_2705
Probable membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0845/TC:8.A.1.2.1; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.886
CV_2295
Probable ABC transporter system, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
     0.881
tauB
Taurine ATP-binding component of a transport system; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
      0.846
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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