STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900176575_00167Unannotated protein. (278 aa)    
Predicted Functional Partners:
GCA_900176575_00168
Unannotated protein.
       0.737
GCA_900176575_00310
Unannotated protein.
  
     0.729
GCA_900176575_02169
Unannotated protein.
    
  0.708
GCA_900176575_00453
Unannotated protein.
  
     0.643
GCA_900176575_00169
Unannotated protein.
       0.616
GCA_900176575_02073
Unannotated protein.
  
     0.574
GCA_900176575_00130
Unannotated protein.
  
     0.561
GCA_900176575_00170
Unannotated protein.
       0.531
GCA_900176575_00209
Unannotated protein.
  
     0.522
GCA_900176575_01261
Unannotated protein.
  
     0.520
Your Current Organism:
Planomicrobium okeanokoites
NCBI taxonomy Id: 244
Other names: ATCC 33414, CCM 320, CIP 105082, Flavobacterium okeanokoites, Flavobacterium okeanokoites (IFO 12536), Flavobacterium okeanokoites IFO12536, IFO 12536, LMG 4030, LMG:4030, NBRC 12536, NCIMB 561, P. okeanokoites, Planococcus okeanokoites, Planococcus okeanokoites IFO 12536, Planococcus okeanokoites IFO12536, Planomicrobium sp. K3B3a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.