STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900176575_00539Unannotated protein. (261 aa)    
Predicted Functional Partners:
GCA_900176575_00541
Unannotated protein.
    
  0.865
GCA_900176575_00392
Unannotated protein.
  
 
  0.692
GCA_900176575_01297
Unannotated protein.
    
 0.682
GCA_900176575_00644
Unannotated protein.
  
 
  0.643
GCA_900176575_01539
Unannotated protein.
  
 
  0.570
GCA_900176575_03210
Unannotated protein.
  
 
  0.538
GCA_900176575_00672
Unannotated protein.
  
    0.520
GCA_900176575_00540
Unannotated protein.
   
   0.516
GCA_900176575_01137
Unannotated protein.
  
 
  0.511
GCA_900176575_01707
Unannotated protein.
 
 
   0.505
Your Current Organism:
Planomicrobium okeanokoites
NCBI taxonomy Id: 244
Other names: ATCC 33414, CCM 320, CIP 105082, Flavobacterium okeanokoites, Flavobacterium okeanokoites (IFO 12536), Flavobacterium okeanokoites IFO12536, IFO 12536, LMG 4030, LMG:4030, NBRC 12536, NCIMB 561, P. okeanokoites, Planococcus okeanokoites, Planococcus okeanokoites IFO 12536, Planococcus okeanokoites IFO12536, Planomicrobium sp. K3B3a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.