STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900176575_01069Unannotated protein. (255 aa)    
Predicted Functional Partners:
GCA_900176575_01417
Unannotated protein.
  
 
  0.758
GCA_900176575_03496
Unannotated protein.
    
  0.669
GCA_900176575_01570
Unannotated protein.
  
  
  0.607
GCA_900176575_01070
Unannotated protein.
       0.589
GCA_900176575_01068
Unannotated protein.
       0.516
GCA_900176575_02276
Unannotated protein.
  
     0.507
GCA_900176575_01067
Unannotated protein.
       0.494
GCA_900176575_01066
Unannotated protein.
       0.479
GCA_900176575_01571
Unannotated protein.
  
     0.468
GCA_900176575_00827
Unannotated protein.
  
  
  0.455
Your Current Organism:
Planomicrobium okeanokoites
NCBI taxonomy Id: 244
Other names: ATCC 33414, CCM 320, CIP 105082, Flavobacterium okeanokoites, Flavobacterium okeanokoites (IFO 12536), Flavobacterium okeanokoites IFO12536, IFO 12536, LMG 4030, LMG:4030, NBRC 12536, NCIMB 561, P. okeanokoites, Planococcus okeanokoites, Planococcus okeanokoites IFO 12536, Planococcus okeanokoites IFO12536, Planomicrobium sp. K3B3a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.