STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900176575_01419Unannotated protein. (518 aa)    
Predicted Functional Partners:
GCA_900176575_02578
Unannotated protein.
 
  
 0.881
GCA_900176575_01420
Unannotated protein.
  
  
 0.823
GCA_900176575_01401
Unannotated protein.
  
 
 0.791
GCA_900176575_00605
Unannotated protein.
    
  0.784
GCA_900176575_02020
Unannotated protein.
  
 
 0.738
GCA_900176575_01517
Unannotated protein.
 
  
 0.693
GCA_900176575_01404
Unannotated protein.
  
 
 0.676
GCA_900176575_01400
Unannotated protein.
  
  
 0.654
GCA_900176575_01422
Unannotated protein.
     
 0.652
GCA_900176575_00548
Unannotated protein.
   
 
 0.648
Your Current Organism:
Planomicrobium okeanokoites
NCBI taxonomy Id: 244
Other names: ATCC 33414, CCM 320, CIP 105082, Flavobacterium okeanokoites, Flavobacterium okeanokoites (IFO 12536), Flavobacterium okeanokoites IFO12536, IFO 12536, LMG 4030, LMG:4030, NBRC 12536, NCIMB 561, P. okeanokoites, Planococcus okeanokoites, Planococcus okeanokoites IFO 12536, Planococcus okeanokoites IFO12536, Planomicrobium sp. K3B3a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.