Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KLO45594.1(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)    
Predicted Functional Partners:
KLO45593.1
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.858
KLO45730.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
KLO45592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.749
KLO45591.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
KLO45921.1
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.684
KLO45844.1
Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
KLO45849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
KLO45867.1
3-phenylpropionate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
KLO45876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
KLO42444.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.632
Your Current Organism:
Mycobacterium nebraskense
NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349
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