Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KLO43848.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
KLO43809.1
Pilus biosynthesis protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.862
KLO43808.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.849
KLO43806.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.842
KLO43807.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.792
KLO43846.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.780
KLO43847.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.752
KLO43810.1
Diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
       0.655
KLO43811.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
KLO43849.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
Your Current Organism:
Mycobacterium nebraskense
NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349
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