KLO41613.1 protein (Mycobacterium nebraskense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KLO41613.1

Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)

Predicted Functional Partners:

KLO41616.1

0.971

KLO41611.1

0.970

KLO41687.1

0.969

KLO41612.1

0.966

KLO41615.1

0.966

KLO41617.1

0.957

KLO39562.1

0.936

KLO41610.1

0.908

KLO41614.1

0.898

KLO39318.1

0.888

Your Current Organism:

Mycobacterium nebraskense

NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLO39318.1	KLO39562.1	ABW17_20230	ABW17_19630	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KLO39318.1	KLO41610.1	ABW17_20230	ABW17_13670	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
KLO39318.1	KLO41611.1	ABW17_20230	ABW17_13675	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KLO39318.1	KLO41612.1	ABW17_20230	ABW17_13680	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
KLO39318.1	KLO41613.1	ABW17_20230	ABW17_13685	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
KLO39318.1	KLO41614.1	ABW17_20230	ABW17_13690	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KLO39318.1	KLO41615.1	ABW17_20230	ABW17_13695	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
KLO39318.1	KLO41616.1	ABW17_20230	ABW17_13700	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KLO39318.1	KLO41617.1	ABW17_20230	ABW17_13705	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
KLO39562.1	KLO39318.1	ABW17_19630	ABW17_20230	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KLO39562.1	KLO41611.1	ABW17_19630	ABW17_13675	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
KLO39562.1	KLO41612.1	ABW17_19630	ABW17_13680	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KLO39562.1	KLO41613.1	ABW17_19630	ABW17_13685	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
KLO39562.1	KLO41614.1	ABW17_19630	ABW17_13690	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
KLO39562.1	KLO41615.1	ABW17_19630	ABW17_13695	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
KLO39562.1	KLO41616.1	ABW17_19630	ABW17_13700	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KLO39562.1	KLO41617.1	ABW17_19630	ABW17_13705	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KLO39562.1	KLO41687.1	ABW17_19630	ABW17_13710	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KLO41610.1	KLO39318.1	ABW17_13670	ABW17_20230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
KLO41610.1	KLO41611.1	ABW17_13670	ABW17_13675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931

page 1 of 6

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About