STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW15872.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (218 aa)    
Predicted Functional Partners:
SFW15867.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.973
SFW29543.1
Hypothetical protein.
  
 0.935
SFW19094.1
Signal transduction histidine kinase.
 
  0.867
SFW37234.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.847
SFW33656.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.837
SFW35558.1
Signal transduction histidine kinase.
 
  0.820
SFW31460.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.819
SFW34980.1
Signal transduction histidine kinase.
  
  0.817
SFW26329.1
Signal transduction histidine kinase.
  
 0.809
SFW20675.1
Signal transduction histidine kinase.
 
  0.807
Your Current Organism:
Ruminococcus sp. YE71
NCBI taxonomy Id: 244362
Other names: R. sp. YE71
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