STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW22605.1Lectin C-type domain-containing protein. (444 aa)    
Predicted Functional Partners:
SFW22594.1
Hypothetical protein.
       0.778
SFW16000.1
Hypothetical protein.
  
    0.746
SFW22933.1
SCP-2 sterol transfer family protein.
  
     0.738
SFW47849.1
Phage tail tape measure protein, TP901 family, core region.
  
 0.718
SFW54685.1
Putative ABC transport system permease protein.
  
 
 0.622
SFW29632.1
Helix-hairpin-helix motif-containing protein.
  
    0.582
SFW30139.1
Hypothetical protein.
 
 
  0.580
SFW46092.1
Putative ABC transport system permease protein.
  
 
 0.555
SFW24416.1
Hypothetical protein.
 
  
 0.554
SFW17187.1
Hypothetical protein.
  
 
  0.549
Your Current Organism:
Ruminococcus sp. YE71
NCBI taxonomy Id: 244362
Other names: R. sp. YE71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.