STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW48109.1Diguanylate cyclase (GGDEF) domain-containing protein. (577 aa)    
Predicted Functional Partners:
SFW14952.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.996
SFW29953.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.996
SFW41846.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.996
SFW51904.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.995
SFW26663.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.991
SFW30086.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
 0.983
SFW29543.1
Hypothetical protein.
  
 0.977
SFW24427.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.976
SFW26513.1
Methyl-accepting chemotaxis protein.
 
 0.964
SFW34942.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.964
Your Current Organism:
Ruminococcus sp. YE71
NCBI taxonomy Id: 244362
Other names: R. sp. YE71
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