sh3bp4 protein (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sh3bp4

SH3-domain binding protein 4. (958 aa)

Predicted Functional Partners:

LOC103395326

0.557

rrs1

0.521

lamtor2

0.493

lamtor1

0.479

lamtor5

0.478

lamtor3

0.475

slc38a9

0.474

tmem82

0.471

paxip1

0.463

LOC103394016

0.408

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103394016	LOC103395326	ENSCSEP00000016355	ENSCSEP00000022192	Uncharacterized protein.	Ras-related GTP binding A.	0.997
LOC103394016	lamtor1	ENSCSEP00000016355	ENSCSEP00000029588	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.993
LOC103394016	lamtor2	ENSCSEP00000016355	ENSCSEP00000018685	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.994
LOC103394016	lamtor3	ENSCSEP00000016355	ENSCSEP00000004537	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.993
LOC103394016	lamtor5	ENSCSEP00000016355	ENSCSEP00000002352	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.994
LOC103394016	sh3bp4	ENSCSEP00000016355	ENSCSEP00000001211	Uncharacterized protein.	SH3-domain binding protein 4.	0.408
LOC103394016	slc38a9	ENSCSEP00000016355	ENSCSEP00000029321	Uncharacterized protein.	Solute carrier family 38 member 9.	0.925
LOC103395326	LOC103394016	ENSCSEP00000022192	ENSCSEP00000016355	Ras-related GTP binding A.	Uncharacterized protein.	0.997
LOC103395326	lamtor1	ENSCSEP00000022192	ENSCSEP00000029588	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.996
LOC103395326	lamtor2	ENSCSEP00000022192	ENSCSEP00000018685	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.997
LOC103395326	lamtor3	ENSCSEP00000022192	ENSCSEP00000004537	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.996
LOC103395326	lamtor5	ENSCSEP00000022192	ENSCSEP00000002352	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.997
LOC103395326	sh3bp4	ENSCSEP00000022192	ENSCSEP00000001211	Ras-related GTP binding A.	SH3-domain binding protein 4.	0.557
LOC103395326	slc38a9	ENSCSEP00000022192	ENSCSEP00000029321	Ras-related GTP binding A.	Solute carrier family 38 member 9.	0.959
lamtor1	LOC103394016	ENSCSEP00000029588	ENSCSEP00000016355	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Uncharacterized protein.	0.993
lamtor1	LOC103395326	ENSCSEP00000029588	ENSCSEP00000022192	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras-related GTP binding A.	0.996
lamtor1	lamtor2	ENSCSEP00000029588	ENSCSEP00000018685	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
lamtor1	lamtor3	ENSCSEP00000029588	ENSCSEP00000004537	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
lamtor1	lamtor5	ENSCSEP00000029588	ENSCSEP00000002352	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
lamtor1	sh3bp4	ENSCSEP00000029588	ENSCSEP00000001211	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	SH3-domain binding protein 4.	0.479