LOC103382227 protein (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103382227

Usher syndrome 1Gb (autosomal recessive). (471 aa)

Predicted Functional Partners:

ush1c

0.888

myo7a

0.562

LOC103395358

0.562

ENSCSEP00000003512

0.516

ENSCSEP00000003530

0.516

ENSCSEP00000004619

0.516

ENSCSEP00000004622

0.516

myo10

0.516

ENSCSEP00000011248

0.516

LOC103392206

0.516

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000003512	ENSCSEP00000003530	ENSCSEP00000003512	ENSCSEP00000003530	Uncharacterized protein.	MyTH4 domain-containing protein.	0.420
ENSCSEP00000003512	LOC103382227	ENSCSEP00000003512	ENSCSEP00000003800	Uncharacterized protein.	Usher syndrome 1Gb (autosomal recessive).	0.516
ENSCSEP00000003512	ush1c	ENSCSEP00000003512	ENSCSEP00000024130	Uncharacterized protein.	Usher syndrome 1C.	0.583
ENSCSEP00000003530	ENSCSEP00000003512	ENSCSEP00000003530	ENSCSEP00000003512	MyTH4 domain-containing protein.	Uncharacterized protein.	0.420
ENSCSEP00000003530	LOC103382227	ENSCSEP00000003530	ENSCSEP00000003800	MyTH4 domain-containing protein.	Usher syndrome 1Gb (autosomal recessive).	0.516
ENSCSEP00000003530	ush1c	ENSCSEP00000003530	ENSCSEP00000024130	MyTH4 domain-containing protein.	Usher syndrome 1C.	0.583
ENSCSEP00000004619	LOC103382227	ENSCSEP00000004619	ENSCSEP00000003800	Myosin X, like 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1Gb (autosomal recessive).	0.516
ENSCSEP00000004619	ush1c	ENSCSEP00000004619	ENSCSEP00000024130	Myosin X, like 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1C.	0.583
ENSCSEP00000004622	LOC103382227	ENSCSEP00000004622	ENSCSEP00000003800	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1Gb (autosomal recessive).	0.516
ENSCSEP00000004622	ush1c	ENSCSEP00000004622	ENSCSEP00000024130	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1C.	0.583
ENSCSEP00000011248	LOC103382227	ENSCSEP00000011248	ENSCSEP00000003800	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1Gb (autosomal recessive).	0.516
ENSCSEP00000011248	LOC103392206	ENSCSEP00000011248	ENSCSEP00000018020	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.823
ENSCSEP00000011248	myo10	ENSCSEP00000011248	ENSCSEP00000011228	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.794
ENSCSEP00000011248	ush1c	ENSCSEP00000011248	ENSCSEP00000024130	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1C.	0.583
LOC103382227	ENSCSEP00000003512	ENSCSEP00000003800	ENSCSEP00000003512	Usher syndrome 1Gb (autosomal recessive).	Uncharacterized protein.	0.516
LOC103382227	ENSCSEP00000003530	ENSCSEP00000003800	ENSCSEP00000003530	Usher syndrome 1Gb (autosomal recessive).	MyTH4 domain-containing protein.	0.516
LOC103382227	ENSCSEP00000004619	ENSCSEP00000003800	ENSCSEP00000004619	Usher syndrome 1Gb (autosomal recessive).	Myosin X, like 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.516
LOC103382227	ENSCSEP00000004622	ENSCSEP00000003800	ENSCSEP00000004622	Usher syndrome 1Gb (autosomal recessive).	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.516
LOC103382227	ENSCSEP00000011248	ENSCSEP00000003800	ENSCSEP00000011248	Usher syndrome 1Gb (autosomal recessive).	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.516
LOC103382227	LOC103392206	ENSCSEP00000003800	ENSCSEP00000018020	Usher syndrome 1Gb (autosomal recessive).	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.516