STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103386109Vitamin D receptor b. (425 aa)    
Predicted Functional Partners:
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.849
ncor1
Nuclear receptor corepressor 1.
    
 0.818
LOC103381159
Nuclear receptor coactivator 1.
    
 0.752
ENSCSEP00000014328
Nuclear receptor coactivator 3.
    
 0.752
ncoa2
Nuclear receptor coactivator 2.
    
 0.752
Ncoa3
Uncharacterized protein.
    
 0.752
ENSCSEP00000000321
Uncharacterized protein.
   
0.694
LOC103385997
Nuclear receptor subfamily 1, group D, member 4b.
   
0.694
LOC103388356
Nuclear receptor subfamily 1, group D, member 2a.
   
0.694
rxra
Retinoid X receptor, alpha a.
   
0.694
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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