STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx4Uncharacterized protein; Belongs to the DEAD box helicase family. (679 aa)    
Predicted Functional Partners:
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.863
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.850
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.794
LOC103386878
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43.
  
  
 0.764
atp5f1c
ATP synthase subunit gamma.
   
 
 0.754
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 
 0.720
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
   
 0.702
sf3b3
Splicing factor 3b, subunit 3.
   
 0.688
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.687
atp5pd
ATP synthase peripheral stalk subunit d.
   
   0.674
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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