STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (633 aa)    
Predicted Functional Partners:
LOC103393708
DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.
  
  
 
0.901
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.849
sf3b1
Splicing factor 3b, subunit 1.
   
 0.806
ebna1bp2
EBNA1 binding protein 2.
   
 0.804
mtrex
Mtr4 exosome RNA helicase.
   
 0.773
dkc1
Dyskeratosis congenita 1, dyskerin.
  
 
 0.764
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.757
ENSCSEP00000027635
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.749
wdr12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.745
LOC103393202
Aly/REF export factor.
   
 0.740
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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