STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103397384AT rich interactive domain 5A (MRF1-like). (597 aa)    
Predicted Functional Partners:
LOC103395611
Sap30-like.
    
 0.699
LOC103387313
CAP-ZIP_m domain-containing protein.
   
  
 0.578
actl6a
Actin-like 6A; Belongs to the actin family.
    
 
 0.553
sap18
Sin3A-associated protein.
     
 0.515
arid4a
AT rich interactive domain 4A (RBP1-like).
   
0.502
rbl1
Retinoblastoma-like 1 (p107).
    
 
 0.498
LOC103390756
Retinoblastoma binding protein 4.
    
 0.497
LOC103379196
Retinoblastoma binding protein 4, like.
    
 0.497
LOC103397013
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.474
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.474
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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